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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28380624_28380822_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28380624 - 28380822
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TGTGACTTACTT
Flanking Amino Acid:
KYEALIKEKERLIVQCDALK
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81
0.7
0.8
80.5
31.5
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
52.8
0.17
1.9
73.41
43.7

Associated Gene:

Gene:
HOOK1
Ensembl Gene ID:
ENSAPLG00000004631
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004883
28361159 - 28387473
26315