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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28381056_28381661_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28381056 - 28381661
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TAATCAGCAATG
Flanking Amino Acid:
LAAEILPVEYREMFIRLQHE
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
89.4
0.89
0.8
88
29.4
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
42.4
-0.7
2.3
51.19
42.9

Associated Gene:

Gene:
HOOK1
Ensembl Gene ID:
ENSAPLG00000004631
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004883
28361159 - 28387473
26315