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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28381803_28382450_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28381803 - 28382450
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGGT
5'SS Class:
major
3'SS Sequence:
TTCTACCTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TAGGTATTAACT
Flanking Amino Acid:
RTVNELETEKRLNEEHIGEL
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.7
40.9
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
63.5
0.31
1.1
64.7
35.3
Minor 5ss
31
-2.2
3.6
47.4
48
Minor BPS
58.5
0.35
1.7
73.79
42.9

Associated Gene:

Gene:
HOOK1
Ensembl Gene ID:
ENSAPLG00000004631
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004883
28361159 - 28387473
26315