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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28383189_28383669_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28383189 - 28383669
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CAGTCTTTCATT
Flanking Amino Acid:
SNLKQKLAAHMEKLSEVHDE
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
82.3
0.73
0.7
77.6
29.8
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
54.8
0.23
1.8
68.12
43.7

Associated Gene:

Gene:
HOOK1
Ensembl Gene ID:
ENSAPLG00000004631
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004883
28361159 - 28387473
26315