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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28384223_28384557_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28384223 - 28384557
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
TTGCCTTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TGACATGTAACA
Flanking Amino Acid:
YKMYLEKARNVIKTLDPKLN
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.7
36.5
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
76.9
0.61
1
72
38
Minor 5ss
30
-2.3
3.2
39
39.8
Minor BPS
46.3
-0.2
2.1
59.6
39.7

Associated Gene:

Gene:
HOOK1
Ensembl Gene ID:
ENSAPLG00000004631
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004883
28361159 - 28387473
26315