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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28386244_28387314_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28386244 - 28387314
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCAA
5'SS Class:
strong_major
3'SS Sequence:
AATTCATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TATTATCTAATT
Flanking Amino Acid:
KLIVTAWYNKSLTLQKLGME
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
70.2
37.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
77.6
0.62
0.9
70
39.6
Minor 5ss
26.7
-2.7
2.9
31.1
43
Minor BPS
58
0.33
1.8
78.96
37

Associated Gene:

Gene:
HOOK1
Ensembl Gene ID:
ENSAPLG00000004631
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004883
28361159 - 28387473
26315