About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28395449_28395700_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28395449 - 28395700
Intron Length:
252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTTA
5'SS Class:
major
3'SS Sequence:
TCTTCCCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAA
U12 Branch Point Sequence:
TCTTCCCAAACA
Flanking Amino Acid:
LYMAIYPEIQARVQAEIDAV
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
69.2
38
Major BPS
63.1
0.33
1.2
72.7
34.3
Major PPT
71.1
0.47
0.9
66.8
33.2
Minor 5ss
38.6
-1.3
3.6
55.4
48.8
Minor BPS
60.1
0.31
2
75.88
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003769
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003880
28394185 - 28398743
4559