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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28395834_28396076_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28395834 - 28396076
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCAAG
5'SS Class:
major
3'SS Sequence:
CCTTTTTGTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
GCAGCACTAACA
Flanking Amino Acid:
IDSYLEEMTKPNSSNLREEN
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
68.8
43.8
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
71.8
0.49
1.1
74.3
34.2
Minor 5ss
34.1
-1.8
2.7
39.7
45.9
Minor BPS
45.8
-0.3
2
55.12
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003769
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003880
28394185 - 28398743
4559