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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28397442_28397687_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28397442 - 28397687
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTTTGCTCACGG
Flanking Amino Acid:
PISAEVFSSLGLISSNGHLW
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.5
32.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
68.6
0.42
1.1
61.6
44.5
Minor 5ss
34.6
-1.8
2.8
35.2
41.4
Minor BPS
41.2
-0.8
2.4
50.75
49.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003769
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003880
28394185 - 28398743
4559