About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28397851_28398412_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28397851 - 28398412
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGT
5'SS Class:
strong_major
3'SS Sequence:
ACCCTTTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTAATT
Flanking Amino Acid:
LTDPLATMQKLVDKYGNIFS
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.9
76.9
38.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.2
0.59
0.8
68.2
36.8
Minor 5ss
30.9
-2.2
3.6
46.8
48.5
Minor BPS
78.7
0.98
1.3
92.74
29.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003769
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003880
28394185 - 28398743
4559