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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28403818_28403988_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28403818 - 28403988
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGGCCG
5'SS Class:
major
3'SS Sequence:
TTGGTTTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTGTATTT
Flanking Amino Acid:
LYMAAYPHIQEKVQLEIDAV
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
49
41.6
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
78.3
0.64
0.9
73.9
36.8
Minor 5ss
29.2
-2.4
3.4
30.7
42.7
Minor BPS
50.7
0.1
2.2
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003768
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003844
28401782 - 28410036
8255