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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28404131_28404642_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28404131 - 28404642
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTACCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACCC
Flanking Amino Acid:
IDCYLKEIEKFKGDTSSYFH
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
65.9
40.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
69.8
0.45
1
68.7
36.2
Minor 5ss
24.4
-2.9
3.1
29.4
43.3
Minor BPS
64.1
0.42
1.6
72.92
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003768
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003844
28401782 - 28410036
8255