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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28404820_28405624_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28404820 - 28405624
Intron Length:
805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCCA
5'SS Class:
major
3'SS Sequence:
GATTTCTCGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTGTTCTGATTT
Flanking Amino Acid:
LLLIGSFWGQLYNAFPLIMR
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
65.6
40
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
69.8
0.45
1
62.6
43.9
Minor 5ss
30.4
-2.2
3.3
39.6
45.9
Minor BPS
50.3
0.09
1.7
67.76
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003768
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003844
28401782 - 28410036
8255