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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28407452_28408063_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28407452 - 28408063
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCGCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
CAACACAGAATC
Flanking Amino Acid:
PLLQEIFRGFGLISSNGHIW
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
75.6
0.58
0.8
69
31.6
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
41.3
-0.6
1.7
45.42
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003768
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003844
28401782 - 28410036
8255