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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28663932_28772111_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28663932 - 28772111
Intron Length:
108180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
GTGACTTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
TTCTCTGTGACT
Flanking Amino Acid:
YDISARTWWMDEFHPFIEAL
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.5
40.3
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
76.8
0.6
1
73.2
41.9
Minor 5ss
34.3
-1.8
2.8
37.3
42.5
Minor BPS
61.3
0.44
2.1
82.51
39.6

Associated Gene:

Gene:
NFIA
Ensembl Gene ID:
ENSAPLG00000003407
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003524
28663836 - 29010549
346714
ENSAPLT00000035027
28663836 - 29013112
349277
ENSAPLT00000031167
28663836 - 29013112
349277
ENSAPLT00000028338
28663836 - 29010549
346714
ENSAPLT00000043906
28663836 - 29010549
346714
ENSAPLT00000022102
28663836 - 29010549
346714
ENSAPLT00000043531
28663836 - 29010549
346714