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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28772644_28900504_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28772644 - 28900504
Intron Length:
127861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GACCCTGTAATT
Flanking Amino Acid:
LYLAYFVHAADSSQSESPSQ
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.8
78.8
35.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.8
0.83
0.8
84.8
35.6
Minor 5ss
33
-1.9
3.1
41.3
45.2
Minor BPS
48.1
-0
2
62.91
41.7

Associated Gene:

Gene:
NFIA
Ensembl Gene ID:
ENSAPLG00000003407
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022102
28663836 - 29010549
346714
ENSAPLT00000043531
28663836 - 29010549
346714
ENSAPLT00000003524
28663836 - 29010549
346714
ENSAPLT00000035027
28663836 - 29013112
349277
ENSAPLT00000031167
28663836 - 29013112
349277
ENSAPLT00000028338
28663836 - 29010549
346714