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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28925119_28934240_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28925119 - 28934240
Intron Length:
9122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
AGTTACTGACTT
Flanking Amino Acid:
SVTELVRVSQTPIAAGTGPN
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
84.2
0.77
0.8
77.2
37.1
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
48.8
-0
1.9
69.33
41.3

Associated Gene:

Gene:
NFIA
Ensembl Gene ID:
ENSAPLG00000003407
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031167
28663836 - 29013112
349277
ENSAPLT00000028338
28663836 - 29010549
346714
ENSAPLT00000043906
28663836 - 29010549
346714
ENSAPLT00000022102
28663836 - 29010549
346714
ENSAPLT00000043531
28663836 - 29010549
346714
ENSAPLT00000003524
28663836 - 29010549
346714
ENSAPLT00000035027
28663836 - 29013112
349277