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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28934359_28936682_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28934359 - 28936682
Intron Length:
2324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTGTTTTTACTT
Flanking Amino Acid:
RRSLPSTSSTSSTKRLKSVE
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.1
25.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
87.3
0.84
0.7
85.3
29.3
Minor 5ss
39.6
-1.2
2.8
49.5
46.6
Minor BPS
57.5
0.31
1.6
71.32
40.7

Associated Gene:

Gene:
NFIA
Ensembl Gene ID:
ENSAPLG00000003407
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028338
28663836 - 29010549
346714
ENSAPLT00000043906
28663836 - 29010549
346714
ENSAPLT00000022102
28663836 - 29010549
346714
ENSAPLT00000043531
28663836 - 29010549
346714
ENSAPLT00000003524
28663836 - 29010549
346714
ENSAPLT00000035027
28663836 - 29013112
349277
ENSAPLT00000031167
28663836 - 29013112
349277