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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28936811_28962297_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28936811 - 28962297
Intron Length:
25487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
TCATTCTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
CATTATTAAATT
Flanking Amino Acid:
QSSGWHEVEPGMPSPTTLKK
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
72.3
39.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
74.9
0.56
1
69.2
41.6
Minor 5ss
38.2
-1.3
3.1
50.1
46.5
Minor BPS
51.4
0.12
1.8
69.44
42.1

Associated Gene:

Gene:
NFIA
Ensembl Gene ID:
ENSAPLG00000003407
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043531
28663836 - 29010549
346714