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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28952750_28953783_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28952750 - 28953783
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
TTTATAAAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTTCTTTTACT
Flanking Amino Acid:
PGSQIALKLPRYLRNPEHRG
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
66
33.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
62.7
0.29
1
62.2
42.5
Minor 5ss
29.7
-2.3
3.2
40
40.1
Minor BPS
74.3
0.85
1.5
87.77
37.8

Associated Gene:

Gene:
NFIA
Ensembl Gene ID:
ENSAPLG00000003407
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043906
28663836 - 29010549
346714
ENSAPLT00000035027
28663836 - 29013112
349277
ENSAPLT00000031167
28663836 - 29013112
349277
ENSAPLT00000022102
28663836 - 29010549
346714