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Intron Name: Anas_platyrhynchos_platyrhynchos_8_28962427_28978317_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28962427 - 28978317

Intron Length:

15891

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGCTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCCTATAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATAAC

U12 Branch Point Sequence:

CTCTATATAACT

Flanking Amino Acid:

HHRPVITGPRASPHATPSTL

Intron Amino Acid Position:

395

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

78.6

37.3

Major BPS

69.1

0.48

32.1

Major PPT

0.79

0.6

80.9

24.6

Minor 5ss

31.2

-2.1

3.5

46.7

48.6

Minor BPS

54.2

0.21

1.8

73.43

43.5

Associated Gene:

Gene:

NFIA

Ensembl Gene ID:

ENSAPLG00000003407

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043531

28663836 - 29010549

346714

ENSAPLT00000035027

28663836 - 29013112

349277

ENSAPLT00000031167

28663836 - 29013112

349277

ENSAPLT00000003524

28663836 - 29010549

346714

ENSAPLT00000043906

28663836 - 29010549

346714