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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28978497_28981033_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28978497 - 28981033
Intron Length:
2537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGAAG
5'SS Class:
major
3'SS Sequence:
TGTTTTTTGGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
TTTAGTATAATT
Flanking Amino Acid:
QQAGQVGFLNPNGSSQGKVH
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
71.6
39.7
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
82.6
0.73
1
80.6
37
Minor 5ss
34
-1.8
3.2
44.2
43.7
Minor BPS
51.3
0.12
2
77.31
39.6

Associated Gene:

Gene:
NFIA
Ensembl Gene ID:
ENSAPLG00000003407
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028338
28663836 - 29010549
346714
ENSAPLT00000043906
28663836 - 29010549
346714
ENSAPLT00000022102
28663836 - 29010549
346714
ENSAPLT00000043531
28663836 - 29010549
346714
ENSAPLT00000003524
28663836 - 29010549
346714
ENSAPLT00000035027
28663836 - 29013112
349277
ENSAPLT00000031167
28663836 - 29013112
349277