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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28981200_28988441_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28981200 - 28988441
Intron Length:
7242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
GCTTCCTCAACG
Flanking Amino Acid:
EGGATSPTSPTYSTPSTSPA
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
81.1
0.7
0.7
75.4
26.6
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
67.5
0.41
1.7
68.65
44.4

Associated Gene:

Gene:
NFIA
Ensembl Gene ID:
ENSAPLG00000003407
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031167
28663836 - 29013112
349277