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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29036108_29042232_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
29036108 - 29042232
Intron Length:
6125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TTCCTTTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTTTCCTTTACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.5
0.66
0.8
75.8
31.7
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
77.7
0.87
1.5
84.68
34.6

Associated Gene:

Gene:
TM2D1
Ensembl Gene ID:
ENSAPLG00000003403
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003462
29035946 - 29054020
18075