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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29042352_29043573_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29042352 - 29043573
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTGTATTGAAAA
Flanking Amino Acid:
LIDFILISMQIVGPSDGSSY
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
72.7
44.5
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
33.6
-1.9
2.9
41.4
45
Minor BPS
52.2
0.07
1.7
66.62
39.4

Associated Gene:

Gene:
TM2D1
Ensembl Gene ID:
ENSAPLG00000003403
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003462
29035946 - 29054020
18075