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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29047145_29050992_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29047145 - 29050992
Intron Length:
3848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTCTTTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
TTGTCTACATTC
Flanking Amino Acid:
GFYKPIACRNVNGYSYKVAV
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
85.6
0.8
0.9
84.2
30.7
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
45.1
-0.3
2
59.13
40.6

Associated Gene:

Gene:
TM2D1
Ensembl Gene ID:
ENSAPLG00000003403
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003462
29035946 - 29054020
18075