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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29051102_29053063_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29051102 - 29053063
Intron Length:
1962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
TTCTGCTTAATT
Flanking Amino Acid:
PMNCTNHTAYVQCLPAPNIT
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
84.3
33.3
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
86.1
0.81
0.7
84.9
29.9
Minor 5ss
38.3
-1.3
3.4
54.5
43.9
Minor BPS
73.2
0.81
1.7
87.41
38.9

Associated Gene:

Gene:
TM2D1
Ensembl Gene ID:
ENSAPLG00000003403
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003462
29035946 - 29054020
18075