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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29062553_29063572_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29062553 - 29063572
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTTTCAACA
Flanking Amino Acid:
QQSIKQLKEQLNYMPPDWSG
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.4
26.8
Major BPS
100
1.24
0.5
100
0
Major PPT
77.1
0.61
0.9
73.6
35.5
Minor 5ss
32.5
-2
3.3
40.3
40.1
Minor BPS
60.8
0.33
1.5
67.67
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002853
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002936
29062282 - 29091683
29402