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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29069022_29070527_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29069022 - 29070527
Intron Length:
1506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAATTTGT
5'SS Class:
major
3'SS Sequence:
TTTGTGTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
TIVPGGLADRDGRLRTGDHI
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
71.6
40.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
73.7
0.53
1.1
71.5
43.2
Minor 5ss
41.5
-0.9
2.8
50.2
46
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002853
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002936
29062282 - 29091683
29402