Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29074147_29075939_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29074147 - 29075939

Intron Length:

1793

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

CCACCCCCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TCTTCTTCATTT

Flanking Amino Acid:

IVGYAGTCDLEPSGIFVKNI

Intron Amino Acid Position:

378

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.01

0.7

86.6

23.3

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

61.2

0.25

0.9

54.5

29.1

Minor 5ss

37.4

-1.4

2.9

50.4

Minor BPS

56.5

0.28

1.8

75.55

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002853

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002936

29062282 - 29091683

29402