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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29076029_29077113_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29076029 - 29077113
Intron Length:
1085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTATATGATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TGTTATATGATT
Flanking Amino Acid:
QIHVHDKIVAVDGVNIQNYT
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
87.4
29
Major BPS
75.8
0.64
1
65.8
41
Major PPT
68.8
0.42
1
67
43.6
Minor 5ss
37.9
-1.4
2.9
52.2
44.4
Minor BPS
50.2
0.09
1.8
73.63
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002853
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002936
29062282 - 29091683
29402