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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29077253_29077560_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29077253 - 29077560
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTA
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
TTTTTCCCATCT
Flanking Amino Acid:
TVSSERCSGKVQPTVPALVS
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.9
35
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
84.3
0.77
0.8
80
31.8
Minor 5ss
37.9
-1.4
3
50.4
45.8
Minor BPS
50.7
0.1
2.1
80.75
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002853
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002936
29062282 - 29091683
29402