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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29077676_29083227_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
29077676 - 29083227
Intron Length:
5552

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCAAAGCCT
5'SS Class:
major
3'SS Sequence:
CATATTTAGGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTAAATTTAATA
Flanking Amino Acid:
KQKDNFQTEKKVPFPPAYEL
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.45
1.2
68.3
36.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
53.9
0.09
1.2
56.7
42.4
Minor 5ss
24.1
-3
4.2
39.6
40.2
Minor BPS
55.7
0.18
1.5
62.91
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002853
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002936
29062282 - 29091683
29402