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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29143862_29151329_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29143862 - 29151329
Intron Length:
7468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTGTTTTAACA
Flanking Amino Acid:
RMHIGDELLEINNQILYGRS
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
84.2
0.77
0.9
81
35.4
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
75.7
0.8
1.2
82.25
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016679
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043603
29143646 - 29199941
56296