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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2915100_2917812_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2915100 - 2917812
Intron Length:
2713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTTACTTTT
5'SS Class:
weak_major
3'SS Sequence:
CTTTCTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
ATAAAGTTAACA
Flanking Amino Acid:
HCTVSFVHFMCVHVFGLCST
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.6
0.04
1.4
63.8
42.9
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
82.7
0.74
0.7
76.7
31.9
Minor 5ss
50.2
0.01
2.5
69.5
40.8
Minor BPS
48.8
-0
2.2
64.86
40.8

Associated Gene:

Gene:
PLPPR4
Ensembl Gene ID:
ENSAPLG00000013020
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013573
2915036 - 2926904
11869