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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29151422_29160122_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29151422 - 29160122
Intron Length:
8701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TAATACATCATT
Flanking Amino Acid:
APSKVKLVFIRNEDAVNQMA
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
74.7
35.3
Major BPS
66.1
0.4
1
73
31.5
Major PPT
86.2
0.81
0.8
80.6
37
Minor 5ss
34.2
-1.8
2.9
42.9
43.6
Minor BPS
46.3
-0.2
2.1
68.31
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016679
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043603
29143646 - 29199941
56296