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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29163446_29169036_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29163446 - 29169036
Intron Length:
5591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGACTTAC
5'SS Class:
major
3'SS Sequence:
TTCACATTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCCTTTTTCACA
Flanking Amino Acid:
LTDEESNKTVSVFPPLLPVD
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
68.2
33.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.2
0.46
0.9
62.2
38.7
Minor 5ss
42.3
-0.9
2.8
52.2
39.3
Minor BPS
56.4
0.19
1.7
65.59
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016679
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043603
29143646 - 29199941
56296