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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29183988_29185769_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29183988 - 29185769
Intron Length:
1782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCATTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
GATTGTGTAATT
Flanking Amino Acid:
RGLGLSIAGKRNGSGVFISD
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.9
36.6
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
66.9
0.38
1
66.2
39.8
Minor 5ss
33.6
-1.9
3.5
49.7
46.1
Minor BPS
47.5
-0.1
2.3
69.25
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016679
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043603
29143646 - 29199941
56296