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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29187211_29189908_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29187211 - 29189908
Intron Length:
2698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CATTTAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTACATTTAATT
Flanking Amino Acid:
SARKTSQNSQASQQSAHSHF
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
77
31.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.6
0.64
0.9
74.9
38.5
Minor 5ss
29.3
-2.4
2.9
35.1
41.4
Minor BPS
65.4
0.56
1.4
79.41
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016679
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043603
29143646 - 29199941
56296