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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29191898_29192978_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29191898 - 29192978
Intron Length:
1081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
GTTGTACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTTTCCATTACT
Flanking Amino Acid:
GVAARTQRLRVGDRIVSING
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
67.8
39.2
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
74.5
0.55
0.9
71
40
Minor 5ss
30.9
-2.2
2.6
29.8
36.6
Minor BPS
71.3
0.75
1.9
93.77
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016679
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043603
29143646 - 29199941
56296