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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29242161_29243065_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
29242161 - 29243065
Intron Length:
905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TATGTATGAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
76.8
0.67
1
66
40.9
Major PPT
87.6
0.85
0.7
85.2
28.8
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
46.9
-0.3
1.8
54.18
41

Associated Gene:

Gene:
USP1
Ensembl Gene ID:
ENSAPLG00000002578
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002606
29241990 - 29248890
6901