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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29243268_29247973_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29243268 - 29247973
Intron Length:
4706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
AGATGTCTAACT
Flanking Amino Acid:
HLKCFAASGIEFDCYGGLSK
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
71.6
40.2
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
81.3
0.7
0.9
83.5
25.2
Minor 5ss
35.2
-1.7
2.8
39
40.2
Minor BPS
48.8
-0
2.1
68.83
41.7

Associated Gene:

Gene:
USP1
Ensembl Gene ID:
ENSAPLG00000002578
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002606
29241990 - 29248890
6901