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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29254922_29255985_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29254922 - 29255985
Intron Length:
1064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTTTACATGC
Flanking Amino Acid:
LRLCFKDFTKRCEDALRKNK
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
75.1
40.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
40.1
-1.1
3.2
57.4
46.9
Minor BPS
41.7
-0.6
2.1
58.59
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021191
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026681
29251529 - 29258014
6486