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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29256093_29256957_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29256093 - 29256957
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTCCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GGTTCTTAAAAA
Flanking Amino Acid:
QGSVGTTVNQGPLEVAQVFL
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
84.1
26.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
71.9
0.49
1
71.8
33.3
Minor 5ss
32.6
-2
3
42.8
44.4
Minor BPS
55.6
0.17
1.8
66.13
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021191
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026681
29251529 - 29258014
6486