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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29259609_29265482_R

Intron Information:

Intron Rank:
40
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
29259609 - 29265482
Intron Length:
5874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGATT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCAAACCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTGTCCAAACCT
Flanking Amino Acid:
QEAFSKIVHQDGKRMFGTYF
Intron Amino Acid Position:
1762

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
84.4
33
Major BPS
61.3
0.28
1
62
30.6
Major PPT
57.7
0.17
1
49
38.5
Minor 5ss
38.3
-1.3
3.4
57.5
46.8
Minor BPS
49.3
0.03
2.2
76.55
45.9

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037443
29259034 - 29349991
90958
ENSAPLT00000021155
29259034 - 29349991
90958