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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29264421_29265482_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29264421 - 29265482
Intron Length:
1062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTACAC
Flanking Amino Acid:
QEAFSKIVHQSTGWEVGNSI
Intron Amino Acid Position:
1792

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
84.4
33
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81
0.7
0.9
76.8
36.1
Minor 5ss
38.3
-1.3
3.4
57.5
46.8
Minor BPS
53.6
0.09
2
72.41
38.4

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016478
29264228 - 29349991
85764