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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29265615_29266580_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29265615 - 29266580
Intron Length:
966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGACAAC
5'SS Class:
major
3'SS Sequence:
GTTATTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGGATGTTATTT
Flanking Amino Acid:
LEQAAASFSMAGMYEAVNEV
Intron Amino Acid Position:
1748

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.4
0.32
1.1
58.3
40.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
81.9
0.72
0.8
77.3
36.8
Minor 5ss
37.8
-1.4
3.3
47.4
43.8
Minor BPS
43.9
-0.3
2.2
60.47
43.7

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037443
29259034 - 29349991
90958
ENSAPLT00000021155
29259034 - 29349991
90958
ENSAPLT00000016478
29264228 - 29349991
85764