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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29266725_29267285_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29266725 - 29267285
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATATTTTATCT
Flanking Amino Acid:
YLPVGCVTFQNISSNVLEES
Intron Amino Acid Position:
1700

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
78.9
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.2
0.66
0.7
78.3
30.1
Minor 5ss
35
-1.7
3.8
55.2
49
Minor BPS
56.3
0.28
1.6
71.81
39.1

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016478
29264228 - 29349991
85764
ENSAPLT00000037443
29259034 - 29349991
90958
ENSAPLT00000021155
29259034 - 29349991
90958