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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29267479_29268483_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29267479 - 29268483
Intron Length:
1005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGCTC
5'SS Class:
major
3'SS Sequence:
TTTTTTTAATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
DPEMLIDLMYRIAKGYQNSP
Intron Amino Acid Position:
1635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.1
61.2
40.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
80.5
0.69
0.9
83.1
32.3
Minor 5ss
33.3
-1.9
3.7
49.6
47
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037443
29259034 - 29349991
90958
ENSAPLT00000021155
29259034 - 29349991
90958
ENSAPLT00000016478
29264228 - 29349991
85764