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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29268585_29268850_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29268585 - 29268850
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATATTTTTTACA
Flanking Amino Acid:
ELRETTFPDQVQDLVFNLHM
Intron Amino Acid Position:
1602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86
0.81
0.8
80.5
36.2
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
60.4
0.32
1.6
69.76
36.7

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037443
29259034 - 29349991
90958
ENSAPLT00000021155
29259034 - 29349991
90958
ENSAPLT00000016478
29264228 - 29349991
85764